| Scientific Name | Notes | Rarity Ranks | Common Name |
|---|---|---|---|
| Allenrolfea occidentalis | CNPS-EB: C | iodine bush | |
| Amsinckia lycopsoides | CNPS-EB: C | bugloss-flowered fiddleneck, bugloss fiddleneck | |
| Astragalus asymmetricus | CNPS-EB: C | San Joaquin locoweeed | |
| Atriplex argentea var. expansa | CNPS-EB: B | silverscale | |
| Atriplex coronata var. coronata | CNPS-EB: *A2 State CNPS: 4.2 Global Rank: G4T3 CNDDB Rank: S3 | crownscale | |
| Atriplex fruticulosa | CNPS-EB: B | ballscale, little oak orach, ball saltbush | |
| Brodiaea terrestris subsp. terrestris | CNPS-EB: B | dwarf brodiaea | |
| Cicendia quadrangularis | CNPS-EB: A2 | timwort | |
| Eryngium vaseyi var. vallicola | CNPS-EB: A1 | coyote-thistle, Vasey's coyote-thistle | |
| Eschscholzia rhombipetala | CNPS-EB: *A1 State CNPS: 1B.1 Global Rank: G1 CNDDB Rank: S1 | diamond-petaled California poppy | |
| Extriplex joaquinana | CNPS-EB: *A2 State CNPS: 1B.2 Global Rank: G2 CNDDB Rank: S2 | San Joaquin spearscale, San Joaquin saltbush | |
| Hordeum jubatum subsp. jubatum | CNPS-EB: A2 | foxtail barley, squirreltail barley | |
| Layia chrysanthemoides | CNPS-EB: A2 | smooth layia | |
| Lepidium acutidens | CNPS-EB: C | sharp-toothed pepper-grass | |
| Lepidium dictyotum | CNPS-EB: B | alkali pepper-grass | |
| Microseris acuminata | CNPS-EB: A1 | Sierra Foothills microseris | |
| Microseris douglasii subsp. tenella | (subsp douglasii is more common) | CNPS-EB: A2 | silver puffs |
| Muilla maritima | CNPS-EB: B | common muilla | |
| Myosurus minimus subsp. minimus | CNPS-EB: C | common mouse-tail | |
| Navarretia cotulifolia | CNPS-EB: *A2 State CNPS: 4.2 Global Rank: G4 CNDDB Rank: S4 | cotula navarretia | |
| Plagiobothrys acanthocarpus | CNPS-EB: B | adobe popcornflower, adobe allocarya | |
| Plagiobothrys fulvus var. campestris | CNPS-EB: B | field popcornflower, fulvous popcornflower | |
| Plagiobothrys humistratus | CNPS-EB: A2 | low popcornflower, dwarf allocarya | |
| Plantago elongata | CNPS-EB: B | annual coast plantain | |
| Pogogyne zizyphoroides | CNPS-EB: A2 | Sacramento beardstyle | |
| Psilocarphus oregonus | CNPS-EB: A2 | Oregon woollyheads, Oregon woolly-marbles | |
| Puccinellia simplex | CNPS-EB: *A2 State CNPS: 1B.2 Global Rank: G2 CNDDB Rank: S2 | little alkali grass | |
| Spergularia macrotheca var. longistyla | CNPS-EB: *A2 State CNPS: 1B.2 Global Rank: G5T2 CNDDB Rank: S2 | large-flowered sand spurry | |
| Stachys albens | CNPS-EB: B | white hedge nettle | |
| Suaeda nigra | (formerly S. moquinii) | CNPS-EB: B | bush seepweed |
| Trifolium depauperatum var. depauperatum | (vars. amplectens and truncatu | CNPS-EB: B | dwarf sack clover |
| Allium crispum | CNPS-EB: A1 | crinkled onion | |
| Alopecurus saccatus | CNPS-EB: B | Howell's meadow foxtail | |
| Amsinckia eastwoodiae | CNPS-EB: A2 | Eastwood's fiddleneck | |
| Astragalus didymocarpus var. didymocarpus | (A. gambelianus is more common | CNPS-EB: A1 | two-seeded milkvetch |
| Astragalus tener var. tener | CNPS-EB: *A2 State CNPS: 1B.2 Global Rank: G2T1 CNDDB Rank: S1 | alkali milkvetch | |
| Athysanus unilateralis | (formerly Heterodraba unilateralis) | CNPS-EB: A1 | heterodraba |
| Atriplex depressa | CNPS-EB: *A2 State CNPS: 1B.2 Global Rank: G2 CNDDB Rank: S2 | brittlescale | |
| Berberis aquifolium var. dictyota | CNPS-EB: A1 | Jepson's mahonia | |
| Bidens frondosa | CNPS-EB: B | sticktight | |
| Bidens laevis | CNPS-EB: A2 | bur-marigold | |
| Blennosperma nanum var. nanum | CNPS-EB: C | blennosperma | |
| Blepharizonia plumosa | CNPS-EB: *A2 State CNPS: 1B.1 Global Rank: G1G2 CNDDB Rank: S1S2 | big tarplant | |
| Camissoniopsis micrantha | CNPS-EB: C | small primrose | |
| Collinsia bartsiifolia var. bartsiifolia | CNPS-EB: A1x | white Chinese houses | |
| Crassula solieri | (C. connata and aquatica are more common) | CNPS-EB: A1x | pygmy-weed |
| Delphinium recurvatum | CNPS-EB: *A1x State CNPS: 1B.2 Global Rank: G2? CNDDB Rank: S2? | recurved larkspur | |
| Downingia bella | CNPS-EB: A1x | Hoover's downingia | |
| Downingia insignis | CNPS-EB: A1 | cupped downingia | |
| Downingia ornatissima var. mirabilis | (historical-1956; formerly D. ornatissima var. eximia) | CNPS-EB: A1x | Solano downingia |
| Downingia pulchella | CNPS-EB: B | flat-faced downingia | |
| Eriogonum gracile var. gracile | CNPS-EB: C | slender woolly wild buckwheat, slender buckwheat | |
| Erythranthe latidens | (formerly Mimulus latidens) | CNPS-EB: A1 | broad-toothed monkeyflower |
| Eschscholzia caespitosa | CNPS-EB: A1 | tufted poppy | |
| Fritillaria agrestis | CNPS-EB: *A2 State CNPS: 4.2 Global Rank: G3 CNDDB Rank: S3 | stinkbells | |
| Gilia capitata subsp. staminea | CNPS-EB: C | blue field gilia | |
| Holocarpha obconica | CNPS-EB: B | San Joaquin tarplant | |
| Lasthenia conjugens | CNPS-EB: *A2 State CNPS: 1B.1 Global Rank: G1 CNDDB Rank: S1 FESA Status: FE | Contra Costa goldfields | |
| Lasthenia fremontii | CNPS-EB: A1 | Fremont's goldfields | |
| Lasthenia glabrata subsp. glabrata | CNPS-EB: A2 | yellow-ray goldfields | |
| Lasthenia minor | CNPS-EB: A1 | coastal goldfields, woolly goldfields | |
| Lasthenia platycarpha | CNPS-EB: A1 | alkali goldfields | |
| Layia glandulosa | (historical-1983 but not seen | CNPS-EB: A1x | white layia |
| Layia platyglossa | CNPS-EB: B | tidy-tips | |
| Lepidium latipes | CNPS-EB: B | dwarf peppergrass | |
| Leptochloa fusca subsp. fascicularis | CNPS-EB: A1 | bearded sprangletop | |
| Leptosiphon liniflorus | (formerly Linanthus l.) | CNPS-EB: A1 | flax-flowered linanthus, flax-flowered leptosiphon |
| Lessingia pectinata var. tenuipes | CNPS-EB: A2 | valley lessingia | |
| Limnanthes douglasii subsp. rosea | CNPS-EB: A1x | meadowfoam | |
| Lomatium caruifolium var. caruifolium | CNPS-EB: B | caraway-leaved lomatium | |
| Mentzelia affinis | CNPS-EB: B | hydra stick-leaf | |
| Microseris campestris | CNPS-EB: A1 | San Joaquin microseris | |
| Microseris elegans | CNPS-EB: A1 | elegant microseris | |
| Monolopia lanceolata | CNPS-EB: A1 | common hillside daisy, common monolopia | |
| Monolopia major | CNPS-EB: B | cupped monolopia | |
| Myosurus minimus subsp. apus | CNPS-EB: *A1 State CNPS: 3.1 Global Rank: G5T2Q CNDDB Rank: S2 | little mousetail | |
| Myosurus sessilis | CNPS-EB: A1 | sessile mouse-tail | |
| Nuttallanthus texanus | CNPS-EB: A2 | blue toadflax | |
| Phacelia ciliata | CNPS-EB: B | Great Valley phacelia, Great Valley phacelia | |
| Phacelia tanacetifolia | CNPS-EB: B | tansy phacelia | |
| Phalaris lemmonii | CNPS-EB: A1x | Lemmon's canary-grass | |
| Pilularia americana | CNPS-EB: A1 | pillwort | |
| Plagiobothrys canescens var. canescens | CNPS-EB: C | valley popcornflower | |
| Plagiobothrys leptocladus | CNPS-EB: A1 | alkali plagiobothrys | |
| Plagiobothrys tenellus | CNPS-EB: B | Pacific popcornflower, slender popcornflower | |
| Plagiobothrys trachycarpus | CNPS-EB: C | rough-nutlet popcornflower, rough-fruited allocarya | |
| Psilocarphus brevissimus var. brevissimus | CNPS-EB: B | dwarf woollyheads, dwarf woolly-marbles | |
| Quercus palmeri | CNPS-EB: A2 | Palmer's oak | |
| Salix gooddingii | CNPS-EB: B | Goodding's black willow | |
| Senecio aphanactis | CNPS-EB: *A1x State CNPS: 2B.2 Global Rank: G3 CNDDB Rank: S2 | chaparral ragwort, rayless ragwort | |
| Symphyotrichum subulatum var. parviflorum | (formerly Aster subulatus var. | CNPS-EB: B | slim aster |
| Trifolium flavulum | (Included within T. fucatum in | CNPS-EB: A1 | bull clover |
| Trifolium fucatum | CNPS-EB: C | bull clover | |
| Triglochin scilloides | CNPS-EB: C | flowering-quillwort | |
| Tropidocarpum capparideum | CNPS-EB: *A1 State CNPS: 1B.1 Global Rank: G1 CNDDB Rank: S1 | caper-fruited tropidocarpum |