| Scientific Name | Notes | Rarity Ranks | Common Name |
|---|---|---|---|
| Allium falcifolium | CNPS-EB: A2 | sickle-leaved onion | |
| Androsace elongata subsp. acuta | CNPS-EB: *A2 State CNPS: 4.2 | California androsace | |
| Aphyllon californicum subsp. jepsonii | CNPS-EB: A1 | Jepson broom-rape | |
| Aphyllon epigalium subsp. epigalium | CNPS-EB: A2 | ||
| Aquilegia eximia | (A. formosa is more common) | CNPS-EB: A2 | Van Houtte's columbine |
| Arctostaphylos manzanita subsp. laevigata | CNPS-EB: *A2 State CNPS: 1B.2 | Contra Costa manzanita | |
| Argemone munita | CNPS-EB: A1 | chicalote, prickly poppy | |
| Calochortus pulchellus | CNPS-EB: *A2 State CNPS: 1B.2 | Mount Diablo fairy-lantern | |
| Castilleja applegatei subsp. martinii | CNPS-EB: A2 | wavy-leaved indian paintbrush | |
| Clarkia biloba subsp. biloba | CNPS-EB: A2 | lobed godetia | |
| Collinsia tinctoria | CNPS-EB: A2 | iodine collinsia | |
| Cordylanthus nidularius | CNPS-EB: *A1 State CNPS: 1B.1 CESA Status: CR | Mount Diablo bird's-beak | |
| Cryptantha corollata | formerly C. decipiens. Also includes previous records for C. rattanii | CNPS-EB: A2 | Coast Range cryptantha |
| Cryptantha juniperensis | (formerly C. nevadensis var. rigida) | CNPS-EB: A1 | Nevada cryptantha |
| Cryptantha microstachys | CNPS-EB: A2 | Tejon cryptantha | |
| Delphinium californicum subsp. interius | CNPS-EB: *A2 State CNPS: 1B.2 | Hospital Canyon larkspur | |
| Eriogonum truncatum | CNPS-EB: *A1 State CNPS: 1B.1 | Mount Diablo buckwheat | |
| Eriophyllum jepsonii | CNPS-EB: *A2 State CNPS: 4.3 | Jepson's woolly sunflower | |
| Eryngium jepsonii | CNPS-EB: *A2 State CNPS: 1B.2 | ||
| Erythranthe inconspicua | CNPS-EB: *A1 State CNPS: 4.3 | ||
| Galium andrewsii subsp. gatense | CNPS-EB: *A2 State CNPS: 4.2 | phlox-leaf serpentine bedstraw, serpentine bedstraw | |
| Helianthella castanea | CNPS-EB: *A2 State CNPS: 1B.2 | Diablo helianthella | |
| Hesperolinon breweri | CNPS-EB: *A2 State CNPS: 1B.2 | Brewer's western flax | |
| Hesperolinon micranthum | CNPS-EB: A2 | small-flowered dwarf flax | |
| Isoetes howellii | CNPS-EB: A1 | Howell's quillwort | |
| Leptosiphon ambiguus | (formerly Linanthus a.) | CNPS-EB: *A2 State CNPS: 4.2 | serpentine leptosiphon, serpentine linanthus |
| Malacothrix clevelandii | CNPS-EB: A2 | Cleveland's malacothrix | |
| Monolopia gracilens | CNPS-EB: *A2 State CNPS: 1B.2 | woodland woollythreads, woodland monolopia | |
| Piperia michaelii | CNPS-EB: *A2 State CNPS: 4.2 | Michael's rein-orchid | |
| Poa howellii | CNPS-EB: A2 | Howell's bluegrass | |
| Ranunculus lobbii | CNPS-EB: *A2 State CNPS: 4.2 | Lobb's aquatic buttercup | |
| Ravenella exigua | Formerly Campanula exigua | CNPS-EB: *A2 State CNPS: 1B.2 | chaparral harebell |
| Ravenella griffinii | Formerly Campanula griffinii | CNPS-EB: A2 | Griffin's campanula |
| Sedum radiatum subsp. radiatum | (formerly S. radiatum) | CNPS-EB: A2 | coast range stonecrop, star-fruited stonecrop |
| Streptanthus albidus subsp. peramoenus | CNPS-EB: *A2 State CNPS: 1B.2 | most beautiful jewel-flower | |
| Streptanthus hispidus | CNPS-EB: *A2 State CNPS: 1B.3 | Mount Diablo jewelflower | |
| Trifolium macraei | CNPS-EB: A1 | Macrae's clover, double-headed clover | |
| Triodanis biflora | CNPS-EB: A2 | Venus' looking-glass | |
| Calandrinia breweri | CNPS-EB: *A2 State CNPS: 4.2 | Brewer's calandrinia | |
| Carex pellita | (formerly C. lanuginosa) | CNPS-EB: A1 | woolly sedge |
| Cornus glabrata | CNPS-EB: A2 | brown dogwood | |
| Dudleya cymosa subsp. cymosa | (ssp. paniculata is more common) | CNPS-EB: A1 | spreading dudleya |
| Elymus trachycaulus subsp. trachycaulus | CNPS-EB: A1 | slender wheat grass | |
| Epilobium torreyi | CNPS-EB: A2 | narrow-leaved boisduvalia | |
| Eriogonum umbellatum var. bahiiforme | Previously mis-recorded as var. smallianum which does not occur in the East Bay | CNPS-EB: *A2 State CNPS: 4.2 | Small's sulphur flower, bay buckwheat |
| Gilia capitata subsp. capitata | CNPS-EB: A1 | blue field gilia | |
| Githopsis diffusa subsp. robusta | CNPS-EB: A2 | southern bluecup | |
| Heterocodon rariflorum | CNPS-EB: A1 | heterocodon | |
| Hydrophyllum occidentale | CNPS-EB: A1 | western waterleaf | |
| Lewisia rediviva var. rediviva | CNPS-EB: A2 | bitterroot | |
| Lupinus luteolus | CNPS-EB: A1x | butter lupine | |
| Micropus amphibolus | (historical - 1955) | CNPS-EB: *A1x State CNPS: 3.2 | Mount Diablo cottonseed, Mt. Diablo cottonweed |
| Microseris douglasii subsp. tenella | (subsp douglasii is more common) | CNPS-EB: A2 | silver puffs |
| Microseris sylvatica | CNPS-EB: *A2 State CNPS: 4.2 | sylvan microseris | |
| Pentachaeta exilis subsp. exilis | CNPS-EB: A1 | meager pentachaeta | |
| Phacelia phacelioides | CNPS-EB: *A2 State CNPS: 1B.2 | Mount Diablo phacelia | |
| Piperia unalascensis | CNPS-EB: A1 | Alaska piperia, slender-spire orchid | |
| Sanicula saxatilis | CNPS-EB: *A2 State CNPS: 1B.2 CESA Status: CR | rock sanicle | |
| Sedella pentandra | (formorely Parvisedum pentandr | CNPS-EB: A2 | Mount Hamilton sedella |
| Agoseris heterophylla var. cryptopleura | CNPS-EB: C | ||
| Agoseris heterophylla var. heterophylla | CNPS-EB: C | ||
| Agoseris retrorsa | CNPS-EB: B-PV | spear-leaved agoseris | |
| Allium unifolium | CNPS-EB: B-PV | one-leaved onion | |
| Allophyllum divaricatum | CNPS-EB: B-PV | straggling gilia | |
| Allophyllum gilioides subsp. gilioides | CNPS-EB: B | straggling gilia | |
| Anisocarpus madioides | (formerly Madia m.) | CNPS-EB: C | woodland tarweed, woodland madia |
| Aphyllon tuberosum | CNPS-EB: B-PV | bulbous broom-rape | |
| Apiastrum angustifolium | CNPS-EB: C | wild celery | |
| Aralia californica | CNPS-EB: B-PV | elk clover | |
| Balsamorhiza deltoidea | CNPS-EB: B-PV | deltoid balsamroot | |
| Boechera breweri subsp. breweri | (formerly Arabis breweri) | CNPS-EB: B-PV | Brewer's rockcress |
| Camissoniopsis hirtella | CNPS-EB: B | small primrose | |
| Camissoniopsis micrantha | CNPS-EB: B-PV | small primrose | |
| Castilleja rubicundula subsp. lithospermoides | CNPS-EB: B-PV | cream sacs | |
| Cirsium cymosum var. cymosum | CNPS-EB: B-PV | peregrine thistle | |
| Cirsium occidentale var. californicum | (var. venustum is more common) | CNPS-EB: B | California thistle |
| Clarkia concinna subsp. concinna | CNPS-EB: C | large godetia | |
| Clarkia gracilis subsp. gracilis | CNPS-EB: C | summer's darling | |
| Clarkia modesta | CNPS-EB: B-PV | modest clarkia | |
| Claytonia gypsophiloides | CNPS-EB: B-PV | coast range montia | |
| Clematis ligusticifolia | CNPS-EB: C | western virgin's bower, virgin's bower | |
| Collinsia sparsiflora var. sparsiflora | CNPS-EB: C | few-flowered blue-eyed Mary | |
| Cordylanthus pilosus subsp. pilosus | CNPS-EB: C | hairy bird's-beak | |
| Cryptantha torreyana var. pumila | CNPS-EB: B | Torrey's cryptantha | |
| Cuscuta subinclusa | CNPS-EB: C | canyon dodder | |
| Delphinium californicum subsp. californicum | CNPS-EB: B | coast larkspur, California larkspur | |
| Delphinium hesperium subsp. hesperium | CNPS-EB: B | western larkspur | |
| Deschampsia bolanderi | Formerly Scribneria bolanderi | CNPS-EB: B | Scribner's grass |
| Diplacus douglasii | (formerly Mimulus d.) | CNPS-EB: B | Douglas monkeyflower |
| Dudleya cymosa subsp. paniculata | CNPS-EB: B-PV | spreading dudleya | |
| Ehrendorferia chrysantha | (formerly Dicentra chrysantha) | CNPS-EB: B | golden ear-drops |
| Elymus elymoides var. elymoides | CNPS-EB: B | squirreltail | |
| Elymus multisetus | CNPS-EB: B-PV | big squirreltail | |
| Ericameria arborescens | CNPS-EB: B-PV | golden-fleece | |
| Eriophyllum lanatum var. achilleoides | CNPS-EB: C | woolly sunflower | |
| Erythranthe cardinalis | (formerly Mimulus c.) | CNPS-EB: B-PV | scarlet monkeyflower |
| Festuca californica | CNPS-EB: B-PV | California fescue | |
| Forestiera pubescens | CNPS-EB: B-PV | desert olive | |
| Frangula californica subsp. tomentella | (formerly Rhamnus t.) | CNPS-EB: C | hoary coffeeberry |
| Fraxinus dipetala | CNPS-EB: B | California ash, flowering ash | |
| Garrya elliptica | CNPS-EB: B-PV | silk tassel bush | |
| Gilia tricolor subsp. diffusa | CNPS-EB: C | birds-eye gilia | |
| Githopsis specularioides | CNPS-EB: B-PV | common bluecup | |
| Helianthus californicus | CNPS-EB: C | California sunflower | |
| Helianthus gracilentus | CNPS-EB: B | slender sunflower | |
| Hesperolinon californicum | CNPS-EB: B-PV | California dwarf flax | |
| Juncus phaeocephalus var. paniculatus | CNPS-EB: B | panicled rush, brown-headed rush | |
| Juncus phaeocephalus var. phaeocephalus | CNPS-EB: C | brownheaded rush | |
| Keckiella corymbosa | CNPS-EB: B-PV | redwood penstemon | |
| Lasthenia glaberrima | CNPS-EB: B | smooth goldfields | |
| Lasthenia microglossa | CNPS-EB: B | small-ray goldfields | |
| Lathyrus jepsonii var. californicus | CNPS-EB: B | buff pea | |
| Layia hieracioides | CNPS-EB: B-PV | tall layia | |
| Layia platyglossa | CNPS-EB: B-PV | tidy-tips | |
| Lepechinia calycina | CNPS-EB: C | pitcher sage | |
| Leptosiphon ciliatus | (formerly Linanthus c.) | CNPS-EB: B-PV | whisker brush |
| Leptosiphon pygmaeus subsp. continentalis | (formerly Linanthus p. ssp. c. | CNPS-EB: B | pygmy linanthus, pygmy leptosiphon |
| Lomatium caruifolium var. caruifolium | CNPS-EB: B-PV | caraway-leaved lomatium | |
| Lupinus pachylobus | CNPS-EB: B | big pod lupine | |
| Malacothamnus fremontii var. fremontii | CNPS-EB: B-PV | white-coat mallow | |
| Melica californica | CNPS-EB: B-PV | California melic | |
| Monardella douglasii | CNPS-EB: B-PV | fenestra monardella, Fenestra monardella | |
| Myriopteris covillei | CNPS-EB: B-PV | Coville's lip fern | |
| Myriopteris intertexta | CNPS-EB: B-PV | coastal lip fern | |
| Packera breweri | (formerly Senecio b.) | CNPS-EB: B-PV | Brewer's ragwort, Brewer's butterweed |
| Papaver californicum | CNPS-EB: B | fire poppy | |
| Pentachaeta alsinoides | CNPS-EB: B-PV | tiny pentachaeta | |
| Perideridia californica | CNPS-EB: B-PV | California yampah | |
| Phacelia breweri | CNPS-EB: B-PV | Brewer's phacelia | |
| Phacelia divaricata | CNPS-EB: B-PV | divaricate phacelia | |
| Pickeringia montana var. montana | CNPS-EB: B-PV | chaparral pea | |
| Pinus coulteri | CNPS-EB: B-PV | Coulter pine | |
| Piperia elongata | CNPS-EB: B-PV | chaparral orchid, wood rein-orchid, elongate piperia | |
| Plagiobothrys fulvus var. campestris | CNPS-EB: B | field popcornflower, fulvous popcornflower | |
| Platanus racemosa | CNPS-EB: B-PV | western sycamore, California sycamore | |
| Quercus berberidifolia | CNPS-EB: B | scrub oak | |
| Quercus durata var. durata | CNPS-EB: B | leather oak | |
| Quercus wislizeni var. frutescens | CNPS-EB: B | shrubby interior live oak | |
| Ranunculus canus var. canus | CNPS-EB: C | Sacramento Valley buttercup | |
| Ranunculus occidentalis var. occidentalis | CNPS-EB: B | western buttercup | |
| Rhamnus crocea | CNPS-EB: B-PV | spiny redberry | |
| Rhus aromatica | (formerly R. trilobata) | CNPS-EB: B-PV | skunk bush, skunkbrush, squawbush |
| Sedum spathulifolium | CNPS-EB: B | broadleaf stonecrop, Pacific stonecrop | |
| Silene laciniata subsp. californica | (formerly Silene c.) | CNPS-EB: C | Indian pink, California pink, California Indian pink |
| Stellaria nitens | CNPS-EB: B-PV | shining chickweed | |
| Stipa cernua | CNPS-EB: B-PV | nodding needlegrass | |
| Stipa lepida | CNPS-EB: B-PV | foothill needlegrass | |
| Stipa pulchra | CNPS-EB: B-PV | purple needlegrass | |
| Tetrapteron graciliflorum | CNPS-EB: B-PV | hill sun cup | |
| Thysanocarpus laciniatus | CNPS-EB: C | lacepod | |
| Tonella tenella | CNPS-EB: B-PV | small-flowered tonella | |
| Trifolium depauperatum var. depauperatum | (vars. amplectens and truncatu | CNPS-EB: C | dwarf sack clover |
| Trifolium obtusiflorum | CNPS-EB: B-PV | clammy clover, creek clover | |
| Turritis glabra | CNPS-EB: B | tower mustard | |
| Zeltnera davyi | (formerly Centaurium d.) | CNPS-EB: B-PV | Davy's centaury, conchalagua |
| Agoseris heterophylla var. unknown | Agoseris heterophylla split into 2 vars. in 2011 Jepson Manual, need field work to resolve vars. | CNPS-EB: B? | annual agoseris |
| Amaranthus blitoides | CNPS-EB: C | procumbent pigweed, prostrate amaranth | |
| Aphyllon vallicola | CNPS-EB: B | California broom-rape | |
| Calystegia malacophylla subsp. pedicellata | CNPS-EB: B | woolly morning-glory | |
| Crocanthemum scoparium var. vulgare | (formerly Helianthemum scoparium var. vulgare) | CNPS-EB: B | peak rush-rose |
| Epilobium campestre | CNPS-EB: C | smooth boisduvalia | |
| Erigeron philadelphicus var. philadelphicus | CNPS-EB: C | fleabane | |
| Eriogonum luteolum var. luteolum | CNPS-EB: C | golden-carpet wild buckwheat, golden carpet | |
| Erythranthe nasuta | CNPS-EB: C | shy monkeyflower | |
| Euphorbia ocellata subsp. ocellata | CNPS-EB: B | valley spurge | |
| Garrya flavescens | CNPS-EB: B | silk tassel bush | |
| Horkelia californica var. frondosa | CNPS-EB: B-PV | leafy horkelia | |
| Koeleria macrantha | CNPS-EB: B-PV | june grass | |
| Layia gaillardioides | CNPS-EB: B-PV | woodland layia | |
| Nemophila parviflora var. parviflora | CNPS-EB: B | small-flowered nemophila | |
| Nemophila pedunculata | CNPS-EB: B | meadow nemophila | |
| Nuttallanthus texanus | CNPS-EB: B | blue toadflax | |
| Penstemon heterophyllus var. heterophyllus | CNPS-EB: B-PV | chaparral penstemon | |
| Phacelia ciliata | CNPS-EB: B | Great Valley phacelia, Great Valley phacelia | |
| Phacelia rattanii | CNPS-EB: B | Rattan's phacelia | |
| Phacelia tanacetifolia | CNPS-EB: B | tansy phacelia | |
| Prunus ilicifolia subsp. ilicifolia | CNPS-EB: B | islay, holly-leafed cherry | |
| Rumex salicifolius | (formerly R. salicifolius var. salicifolius) | CNPS-EB: B | willow dock |
| Sagina decumbens subsp. occidentalis | (S. apetala is more common) | CNPS-EB: B | western pearlwort |
| Senecio aronicoides | CNPS-EB: B-PV | rayless ragwort, California butterweed | |
| Trifolium columbinum | CNPS-EB: C | olive clover | |
| Trifolium fucatum | CNPS-EB: B-PV | bull clover | |
| Tropidocarpum gracile | CNPS-EB: B-PV | slender tropidocarpum | |
| Viola purpurea subsp. quercetorum | CNPS-EB: C | mountain violet |